SpaMIE: Spatial Multi-Omics Imputation and Embedding

Contents:

• Installation
  • 1. Clone the GitHub repository and navigate into the project directory:
  • 2. Create a new conda environment and activate it:
  • 3. Install core dependencies and SpaMIE:
  • 4. Download demo datasets:
• Inputation and integration for simulation
  • loading package
  • Imputation
  • Integration
  • Visualisation
• Inputation and integration for two batch simulation
  • Inputation
  • Integration
• Imputation for humanskin data
  • loading package
  • Imputation
• Imputation and Integration for Mouse Embryo data
  • loading package
  • Imputation
  • Integration
• Imputation and Integration for Mouse Brain data
  • loading package
  • Imputation
  • Integration
  • Visualisation
• Integration for Mouse Spleen data
  • loading package
  • Integration
  • Visualisation